BoltzGen
BoltzGen is installed in a shared conda environment (see usage here):
conda activate boltzgen
boltzgen run example/vanilla_protein/1g13prot.yaml \
--output workbench/test_run \
--protocol protein-anything \
--num_designs 10 \
--budget 2
# --num_designs is the number of intermediate designs. In practice you will want between 10,000 - 60,000
# --budget is how many designs should be in the final diversity optimized set